Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
LSCOP2B SuperfamilyWinged helix DNA-binding domain8055720 3000034 SCOP2B (2022-02-25)
MSCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052708 3002138 SCOP2B (2022-02-25)
MSCOP2B SuperfamilyNucleic acid-binding proteins8052707 3000135 SCOP2B (2022-02-25)
NSCOP2B SuperfamilyL30e-like8063980 3001739 SCOP2B (2022-02-25)
OSCOP2B SuperfamilyS15/NS1 RNA-binding domain8052971 3001284 SCOP2B (2022-02-25)
OSCOP2B SuperfamilyHomeodomain-like8052970 3000001 SCOP2B (2022-02-25)
PSCOP2B SuperfamilyTranslational machinery components8097832 3000571 SCOP2B (2022-02-25)
RSCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082683 3000100 SCOP2B (2022-02-25)
TSCOP2B SuperfamilyS13-like H2TH domain8101439 3000053 SCOP2B (2022-02-25)
USCOP2B SuperfamilyWinged helix DNA-binding domain8089322 3000034 SCOP2B (2022-02-25)
VSCOP2B SuperfamilyRibosomal protein S108097814 3001336 SCOP2B (2022-02-25)
XSCOP2B SuperfamilyRibosomal protein S88079081 3000709 SCOP2B (2022-02-25)
AA [auth a]SCOP2B SuperfamilyWinged helix DNA-binding domain8090991 3000034 SCOP2B (2022-02-25)
BA [auth b]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053150 3000068 SCOP2B (2022-02-25)
CSCOP2B SuperfamilyRibosomal S3Ae-like8053216 3002166 SCOP2B (2022-02-25)
DA [auth d]SCOP2B SuperfamilyNucleic acid-binding proteins8095265 3000135 SCOP2B (2022-02-25)
EA [auth e]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052584 3000068 SCOP2B (2022-02-25)
FA [auth f]SCOP2B SuperfamilyRibosomal protein S30e-like8053455 3002190 SCOP2B (2022-02-25)
HA [auth h]SCOP2B SuperfamilyWD40 repeat-like8097816 3001694 SCOP2B (2022-02-25)
NA [auth AB]SCOP2B SuperfamilyTranslational proteins8078357 3000811 SCOP2B (2022-02-25)
OA [auth AC]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like8052828 3002143 SCOP2B (2022-02-25)
OA [auth AC]SCOP2B SuperfamilyRibosomal protein L48052829 3001146 SCOP2B (2022-02-25)
PA [auth AD]SCOP2B SuperfamilyTranslational machinery components8052886 3000571 SCOP2B (2022-02-25)
UA [auth AI]SCOP2B SuperfamilyRibosomal protein L16p/L10e8097320 3000884 SCOP2B (2022-02-25)
VA [auth AJ]SCOP2B SuperfamilyRL5-like8073894 3001709 SCOP2B (2022-02-25)
YA [auth AN]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8082477 3000210 SCOP2B (2022-02-25)
AB [auth AP]SCOP2B SuperfamilyRibosomal protein L228097828 3001078 SCOP2B (2022-02-25)
FB [auth AU]SCOP2B Superfamily60S Ribosomal protein L22e8061156 3002158 SCOP2B (2022-02-25)
GB [auth AV]SCOP2B Superfamily50S Ribosomal protein L14-like8072048 3000433 SCOP2B (2022-02-25)
FSCOP2B SuperfamilyAlpha-L RNA-binding motif8052745 3001473 SCOP2B (2022-02-25)
FSCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052747 3000334 SCOP2B (2022-02-25)
FSCOP2B SuperfamilyNucleic acid-binding proteins8052746 3000135 SCOP2B (2022-02-25)
IB [auth AX]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095966 3000210 SCOP2B (2022-02-25)
JB [auth AY]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076754 3000334 SCOP2B (2022-02-25)
KB [auth AZ]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053047 3000334 SCOP2B (2022-02-25)
LB [auth Aa]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8097818 3001045 SCOP2B (2022-02-25)
NB [auth Ac]SCOP2B SuperfamilyL30e-like8094953 3001739 SCOP2B (2022-02-25)
PB [auth Ae]SCOP2B SuperfamilyRibosomal protein L32e8102090 3000982 SCOP2B (2022-02-25)
QB [auth Af]SCOP2B SuperfamilyTranslational proteins8093714 3000811 SCOP2B (2022-02-25)
GSCOP2B SuperfamilyRibosomal protein S78066001 3000799 SCOP2B (2022-02-25)
RB [auth Ag]SCOP2B SuperfamilyRibosomal protein L34e-like8053543 3002203 SCOP2B (2022-02-25)
TB [auth Ai]SCOP2B SuperfamilyRibosomal protein L36e8053119 3002161 SCOP2B (2022-02-25)
WB [auth Al]SCOP2B SuperfamilyRibosomal protein L39e8095597 3001756 SCOP2B (2022-02-25)
AC [auth Ap]SCOP2B SuperfamilyZn-binding ribosomal proteins8101435 3001320 SCOP2B (2022-02-25)
CC [auth AK]SCOP2B SuperfamilyRibosomal protein L1p/L10e-like8065344 3001911 SCOP2B (2022-02-25)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
JRibosomal_S8ee6p5jJ1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_S8eECOD (1.6)
KS4e6p5jK1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
LS10_plectine6p5jL1 A: alpha arraysX: HTHH: HTHT: wingedF: S10_plectinECOD (1.6)
MRibosomal_S17_1e6p5jM1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
NRibosomal_L7Aee6p5jN1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
ORibosomal_S13_Ne6p5jO1 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: Ribosomal_S13_NECOD (1.6)
ORibosomal_S15_2e6p5jO2 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_2ECOD (1.6)
PRibosomal_S11e6p5jP1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
QRibosomal_S19e6p5jQ1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
RRibosomal_S9e6p5jR1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
SRibosomal_S17ee6p5jS1 A: alpha arraysX: HTHH: HTHT: FF domainF: Ribosomal_S17eECOD (1.6)
BRibosomal_S2_2e6p5jB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2_2ECOD (1.6)
TRibosomal_S13e6p5jT1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13ECOD (1.6)
URibosomal_S19ee6p5jU1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S19eECOD (1.6)
VRibosomal_S10_1e6p5jV1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_1ECOD (1.6)
WRibosomal_S21ee6p5jW1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: Ribosomal_S21eECOD (1.6)
XRibosomal_S8_N_1e6p5jX2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_N_1ECOD (1.6)
XRibosomal_S8_C_1e6p5jX1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_C_1ECOD (1.6)
YRibosom_S12_S23e6p5jY1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
ZRibosomal_S24ee6p5jZ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_S24eECOD (1.6)
AA [auth a]Ribosomal_S25e6p5ja1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S25ECOD (1.6)
BA [auth b]Ribosomal_S26ee6p5jb1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S26eECOD (1.6)
CA [auth c]Ribosomal_S27ee6p5jc1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27eECOD (1.6)
CRibosomal_S3Ae_Ne6p5jC2 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: Ribosomal_S3Ae_NECOD (1.6)
CRibosomal_S3Ae_Ce6p5jC1 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: Ribosomal_S3Ae_CECOD (1.6)
DA [auth d]Ribosomal_S28ee6p5jd1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S28eECOD (1.6)
EA [auth e]Ribosomal_S14_2e6p5je1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_2ECOD (1.6)
FA [auth f]Ribosomal_S30e6p5jf1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: Ribosomal_S30ECOD (1.6)
GA [auth g]Ribosomal_S27e6p5jg1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27ECOD (1.6)
HA [auth h]DUF1899e6p5jh1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: DUF1899ECOD (1.6)
MA [auth AA]Ribosomal_L2_1e6p5jAA2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
MA [auth AA]Ribosomal_L2_C_2e6p5jAA1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_C_2ECOD (1.6)
DRibosomal_S5_C_1e6p5jD2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_C_1ECOD (1.6)
DRibosomal_S5_3e6p5jD1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5_3ECOD (1.6)
DRibosomal_S5_2e6p5jD3 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: Ribosomal_S5_2ECOD (1.6)
NA [auth AB]Ribosomal_L3e6p5jAB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
OA [auth AC]Ribosomal_L4e6p5jAC1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
OA [auth AC]Ribos_L4_asso_Ce6p5jAC2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: Ribos_L4_asso_CECOD (1.6)
PA [auth AD]Ribosomal_L5ee6p5jAD1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L5eECOD (1.6)
QA [auth AE]Ribosomal_L6ee6p5jAE1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L6eECOD (1.6)
RA [auth AF]Ribosomal_L30_1e6p5jAF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30_1ECOD (1.6)
SA [auth AG]Ribosomal_L7Ae_1e6p5jAG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
TA [auth AH]Ribosomal_L6_2e6p5jAH1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_2ECOD (1.6)
TA [auth AH]Ribosomal_L6e6p5jAH2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
UA [auth AI]Ribosomal_L16e6p5jAI1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
VA [auth AJ]Ribosomal_L5_Ce6p5jAJ1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
WA [auth AL]Ribosomal_L13ee6p5jAL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: Ribosomal_L13eECOD (1.6)
ERibosomal_S3_Ce6p5jE1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
EKH_2_3e6p5jE2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_3ECOD (1.6)
XA [auth AM]Ribosomal_L14ee6p5jAM1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L14eECOD (1.6)
YA [auth AN]Ribosomal_L15ee6p5jAN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L15eECOD (1.6)
ZA [auth AO]Ribosomal_L13e6p5jAO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
AB [auth AP]Ribosomal_L22e6p5jAP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
BB [auth AQ]Ribosomal_L18e6p5jAQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
CB [auth AR]Ribosomal_L19e_Ne6p5jAR1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: Ribosomal_L19e_NECOD (1.6)
CB [auth AR]Ribosomal_L19e_Ce6p5jAR2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: Ribosomal_L19e_CECOD (1.6)
DB [auth AS]Ribosomal_L18Ae6p5jAS1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: Ribosomal_L18AECOD (1.6)
EB [auth AT]Ribosomal_L21ee6p5jAT1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L21eECOD (1.6)
FB [auth AU]Ribosomal_L22ee6p5jAU1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: Ribosomal_L22eECOD (1.6)
GB [auth AV]Ribosomal_L14e6p5jAV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
FRibosomal_S4ee6p5jF1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S4eECOD (1.6)
F40S_S4_Ce6p5jF2 A: beta barrelsX: SH3H: SH3T: SH3F: 40S_S4_CECOD (1.6)
FRS4NTe6p5jF3 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: RS4NTECOD (1.6)
HB [auth AW]Ribosomal_L24ee6p5jAW1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_L24eECOD (1.6)
IB [auth AX]Ribosomal_L23_3e6p5jAX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_3ECOD (1.6)
JB [auth AY]Ribosomal_L26e6p5jAY1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L26ECOD (1.6)
KB [auth AZ]Ribosomal_L27ee6p5jAZ1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L27eECOD (1.6)
LB [auth Aa]Ribosomal_L18e6p5jAa1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
MB [auth Ab]Ribosomal_L29ee6p5jAb1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: Ribosomal_L29eECOD (1.6)
NB [auth Ac]Ribosomal_L7Aee6p5jAc1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
OB [auth Ad]Ribosomal_L31ee6p5jAd1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: Ribosomal_L31eECOD (1.6)
PB [auth Ae]Ribosomal_L32ee6p5jAe1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: Ribosomal_L32eECOD (1.6)
QB [auth Af]Ribosomal_L35Aee6p5jAf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L35AeECOD (1.6)
GRibosomal_S7_1e6p5jG1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
RB [auth Ag]Ribosomal_L34ee6p5jAg1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: Ribosomal_L34eECOD (1.6)
SB [auth Ah]Ribosomal_L29_2e6p5jAh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29_2ECOD (1.6)
TB [auth Ai]Ribosomal_L36ee6p5jAi1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: Ribosomal_L36eECOD (1.6)
UB [auth Aj]Ribosomal_L37ee6p5jAj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37eECOD (1.6)
VB [auth Ak]Ribosomal_L38ee6p5jAk1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: Ribosomal_L38eECOD (1.6)
WB [auth Al]Ribosomal_L39e6p5jAl1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: Ribosomal_L39ECOD (1.6)
XB [auth Am]Ribosomal_L40ee6p5jAm1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L40eECOD (1.6)
YB [auth An]Ribosomal_L41e6p5jAn1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: Ribosomal_L41ECOD (1.6)
ZB [auth Ao]Ribosomal_L44e6p5jAo1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L44ECOD (1.6)
AC [auth Ap]Ribosomal_L37aee6p5jAp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37aeECOD (1.6)
HRibosomal_S6ee6p5jH1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_S6eECOD (1.6)
BC [auth Ar]Ribosomal_L28ee6p5jAr1 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: Ribosomal_L28eECOD (1.6)
CC [auth AK]Ribosomal_L1_2nd_1e6p5jAK2 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: Ribosomal_L1_2nd_1ECOD (1.6)
CC [auth AK]Ribosomal_L1_1st_1e6p5jAK1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: Ribosomal_L1_1st_1ECOD (1.6)
IRibosomal_S7e_Ne6p5jI2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_NECOD (1.6)
IRibosomal_S7e_C_1e6p5jI1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_C_1ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
K PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- FamilyFamily
K PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
DomainDomain
L PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.DomainDomain
M PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- FamilyFamily
M PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- DomainDomain
N PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
DomainDomain
O PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].DomainDomain
O PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- DomainDomain
P PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- FamilyFamily
Q PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- DomainDomain
R PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- FamilyFamily
S PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- FamilyFamily
T PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- FamilyFamily
U PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- FamilyFamily
V PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.DomainDomain
W PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- FamilyFamily
X PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- DomainDomain
Y PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- FamilyFamily
Z PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- FamilyFamily
AA [auth a]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- FamilyFamily
BA [auth b]PF01283Ribosomal protein S26e (Ribosomal_S26e)Ribosomal protein S26e- FamilyFamily
CA [auth c]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- FamilyFamily
C PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- FamilyFamily
DA [auth d]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- FamilyFamily
EA [auth e]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- FamilyFamily
FA [auth f]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- FamilyFamily
GA [auth g]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
DomainDomain
HA [auth h]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- RepeatRepeat
MA [auth AA]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- DomainDomain
MA [auth AA]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- DomainDomain
NA [auth AB]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- FamilyFamily
OA [auth AC]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.DomainDomain
OA [auth AC]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- FamilyFamily
PA [auth AD]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- FamilyFamily
PA [auth AD]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.DomainDomain
QA [auth AE]PF03868Ribosomal protein L6, N-terminal domain (Ribosomal_L6e_N)Ribosomal protein L6, N-terminal domain- DomainDomain
QA [auth AE]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- FamilyFamily
RA [auth AF]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].DomainDomain
RA [auth AF]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.DomainDomain
SA [auth AG]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
DomainDomain
TA [auth AH]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- DomainDomain
UA [auth AI]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- DomainDomain
VA [auth AJ]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- DomainDomain
VA [auth AJ]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.DomainDomain
E PF07650KH domain (KH_2)KH domain- DomainDomain
E PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.DomainDomain
XA [auth AM]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- FamilyFamily
YA [auth AN]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- FamilyFamily
AB [auth AP]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.DomainDomain
CB [auth AR]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- FamilyFamily
EB [auth AT]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- FamilyFamily
FB [auth AU]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- FamilyFamily
GB [auth AV]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- DomainDomain
F PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- FamilyFamily
F PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- FamilyFamily
F PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].DomainDomain
F PF00467KOW motif (KOW)KOW motif- FamilyFamily
HB [auth AW]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- DomainDomain
IB [auth AX]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- FamilyFamily
IB [auth AX]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- FamilyFamily
JB [auth AY]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- FamilyFamily
JB [auth AY]PF00467KOW motif (KOW)KOW motif- FamilyFamily
KB [auth AZ]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- FamilyFamily
KB [auth AZ]PF00467KOW motif (KOW)KOW motif- FamilyFamily
LB [auth Aa]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- FamilyFamily
MB [auth Ab]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- FamilyFamily
NB [auth Ac]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
DomainDomain
OB [auth Ad]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- FamilyFamily
PB [auth Ae]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- FamilyFamily
QB [auth Af]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- DomainDomain
G PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.DomainDomain
RB [auth Ag]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- FamilyFamily
SB [auth Ah]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- FamilyFamily
TB [auth Ai]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- FamilyFamily
UB [auth Aj]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- FamilyFamily
WB [auth Al]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- FamilyFamily
YB [auth An]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- FamilyFamily
ZB [auth Ao]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- FamilyFamily
AC [auth Ap]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- FamilyFamily
H PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- FamilyFamily
BC [auth Ar]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- FamilyFamily
CC [auth AK]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.DomainDomain
I PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- FamilyFamily

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 2]18S rRNAnonenonenone
J eS8nonenonenone
K uS4
    L eS10
        M uS17
          N eS12
            O uS15
              P uS11
                Q uS19
                R uS9
                S eS17
                  B uS2nonenonenone
                  T uS13
                    U eS19
                      V uS10
                        W eS21
                          X uS8
                            Y uS12
                              Z eS24
                                AA [auth a]eS25
                                BA [auth b]eS26
                                  CA [auth c]eS27
                                    C eS1
                                    DA [auth d]eS28
                                    EA [auth e]eS29
                                      FA [auth f]eS30
                                        GA [auth g]eS31
                                          HA [auth h]RACK1
                                            IA [auth 1]IAPV-IRESnonenonenone
                                            JA [auth 5]28S rRNAnonenonenone
                                            KA [auth 7]5S rRNAnonenonenone
                                            LA [auth 8]5.8S rRNAnonenonenone
                                            MA [auth AA]uL2
                                              D uS5nonenonenone
                                              NA [auth AB]uL3
                                                OA [auth AC]uL4
                                                  PA [auth AD]uL18
                                                    QA [auth AE]eL6
                                                      RA [auth AF]uL30
                                                        SA [auth AG]eL8
                                                          TA [auth AH]uL6
                                                            UA [auth AI]uL16
                                                              VA [auth AJ]uL11
                                                                WA [auth AL]eL13nonenonenone
                                                                E uS3
                                                                XA [auth AM]L14e
                                                                  YA [auth AN]eL15
                                                                    ZA [auth AO]uL13nonenonenone
                                                                    AB [auth AP]uL22
                                                                      BB [auth AQ]eL18nonenonenone
                                                                      CB [auth AR]eL19
                                                                        DB [auth AS]eL20nonenonenone
                                                                        EB [auth AT]eL21
                                                                          FB [auth AU]eL22
                                                                            GB [auth AV]uL14
                                                                              F eS4
                                                                                HB [auth AW]eL24
                                                                                  IB [auth AX]eL23
                                                                                    JB [auth AY]uL24
                                                                                    KB [auth AZ]eL27
                                                                                      LB [auth Aa]uL15
                                                                                        MB [auth Ab]eL29
                                                                                          NB [auth Ac]eL30
                                                                                            OB [auth Ad]eL31
                                                                                              PB [auth Ae]eL32
                                                                                                QB [auth Af]eL33
                                                                                                  G uS7
                                                                                                    RB [auth Ag]eL34
                                                                                                      SB [auth Ah]eL35
                                                                                                        TB [auth Ai]eL36
                                                                                                          UB [auth Aj]eL37
                                                                                                            VB [auth Ak]eL38nonenonenone
                                                                                                            WB [auth Al]eL39
                                                                                                              XB [auth Am]eL40nonenonenone
                                                                                                              YB [auth An]eL41
                                                                                                                ZB [auth Ao]eL42
                                                                                                                  AC [auth Ap]eL43
                                                                                                                    H eS6
                                                                                                                      BC [auth Ar]eL28
                                                                                                                        CC [auth AK]uL1
                                                                                                                          I eS7