Cryo-EM structure of DkTx-bound minimal TRPV1 at the pre-open state
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth F] | EUF08715 | e7l2rF2 | A: few secondary structure elements | X: omega toxin-like | H: omega toxin-related | T: omega toxin-related | F: EUF08715 | ECOD (1.6) |
C [auth E] | EUF08715 | e7l2rE2 | A: few secondary structure elements | X: omega toxin-like | H: omega toxin-related | T: omega toxin-related | F: EUF08715 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.25.40.20 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Ankyrin repeat-containing domain | CATH (utative) |
D [auth B] | 1.25.40.20 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Ankyrin repeat-containing domain | CATH (utative) |
E [auth C] | 1.25.40.20 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Ankyrin repeat-containing domain | CATH (utative) |
F [auth D] | 1.25.40.20 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Ankyrin repeat-containing domain | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth B], E [auth C], F [auth D] | PF00023 | Ankyrin repeat (Ank) | Ankyrin repeat | - | Repeat |
A, D [auth B], E [auth C], F [auth D] | PF00520 | Ion transport protein (Ion_trans) | Ion transport protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Ion channel (VIC) superfamily | Transient receptor potential channels |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |