Data From External Resources Integrated Into RCSB PDB
ATC | Anatomical Therapeutic Chemical (ATC) Classification System from World Health Organization |
Binding MOAD | Binding affinities |
BindingDB | Binding affinities |
BMRB | BMRB-to-PDB mappings |
Catalytic Site Atlas | Active sites and catalytic residues in enzymes |
CATH | Protein structure classification |
CCDC | The Cambridge Crystallographic Data Centre |
ChEBI | Chemical entities of biological interest |
ChEMBL | Manually curated database of bioactive molecules with drug-like properties |
Crystallographic Open Database | Open-access collection of crystal structures of organic, inorganic, metal-organics compounds and minerals, excluding biopolymers. |
DrugBank | Drug and drug target data |
ECOD | Evolutionary Classification of Protein Domains |
EMDB | 3DEM density maps and associated metadata |
ExPASy | Enzyme classification |
Gencode | Gene structure data |
Gene Ontology | Gene structure data |
Genotype-Tissue Expression - GTEx (NIH Common Fund Data Resource) | Tissue-specific gene expression data |
GlyCosmos | A web portal aiming to integrate the glycosciences with the life sciences about genes, proteins, lipids, pathways and diseases. |
GlyGen | A data integration and dissemination resource for carbohydrate and glycoconjugate related data which provides computational and informatics resources and tools for glycosciences research. |
GlyTouCan | An international glycan structure repository with unique accession code for each unique glycan. |
HMMER3 | Sequence similarity searches |
Human Gene Nomenclature Committee | Human gene name nomenclature and genomic information |
IMGT | The international ImMunoGeneTics information system |
Immune Epitope Database | Antibody and T cell epitopes |
International Mouse Phenotyping Consortium - IMPC (NIH Common Fund Data Resource) | Mouse gene phenotype data |
MemProtMD | Annotation of transmembrane protein structures |
mpstruc | Classification of transmembrane protein structures |
NCBI Gene | Gene info, reference sequences, et al. |
NCBI Taxonomy | Organism Classification |
NDB | Experimentally-determined nucleic acids and complex assemblies |
OLDERADO | NMR domain composition and clustering |
OPM | Classification of transmembrane protein structures and membrane segments |
PDBbind-CN | Binding affinities |
PDBflex | Protein structure flexibility |
PDBTM | Annotation of transmembrane protein structures and membrane segments |
Pfam | Protein families |
Pharos - Illuminating the Druggable Genome (NIH Common Fund Data Resource) | Drug targets and diseases |
PhospoSitePlus | Mammalian post-translational modifications |
Protein Model Portal | Homology models |
ProteinDiffraction.org | Diffraction images |
PubChem | Chemical information |
PubMed | Citation information |
PubMedCentral | Open access literature |
Recon3D | A 3-Dimensional View of Human Metabolism and Disease |
RECOORD | NMR structure ensembles |
RESID | Protein modifications |
SAbDab | The Structural Antibody Database |
SBGrid | Structural Biology Data Grid / diffraction images |
SCOP | Structural Classification of Proteins |
SCOPe | Structural Classification of Proteins — extended |
SIFTS | Structure, function, taxonomy, sequence |
UCSC genome browser | Human genome data |
UniProt | Protein sequences and annotations |
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Last updated: 1/27/2022