Download MendeleyISW1a-dinucleosome
Zhucheng, C., Lifei, L., Kangjing, C.To be published.
7X3T
Cryo-EM structure of ISW1a-dinucleosome
- PDB DOI: https://doi.org/10.2210/pdb7X3T/pdb
- EM Map EMD-32992: EMDB EMDataResource
- NAKB: 7X3T
- Classification: PROTEIN BINDING
- Organism(s): Xenopus laevis, synthetic construct, Saccharomyces cerevisiae S288C
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2022-03-01 Released: 2023-09-20
- Funding Organization(s): National Natural Science Foundation of China (NSFC)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 5.40 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Histone H3 | A, E, L [auth K], P [auth O] | 136 | Xenopus laevis | Mutation(s): 0 Gene Names: LOC121398065, LOC108703785, LOC121398067 |  |
UniProt | |||||
Find proteins for A0A310TTQ1 (Xenopus laevis) Explore A0A310TTQ1 Go to UniProtKB: A0A310TTQ1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A310TTQ1 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Histone H4 | B, F, M [auth L], Q [auth P] | 103 | Xenopus laevis | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P62799 (Xenopus laevis) Explore P62799 Go to UniProtKB: P62799 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P62799 | ||||
Sequence AnnotationsExpand | |||||
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(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Histone H2A | C, G, N [auth M], R [auth Q] | 130 | Xenopus laevis | Mutation(s): 0 Gene Names: h2ac14.L, h2ac14, hist1h2aj, hist1h2aj.L, LOC494591 |  |
UniProt | |||||
Find proteins for Q6AZJ8 (Xenopus laevis) Explore Q6AZJ8 Go to UniProtKB: Q6AZJ8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6AZJ8 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Histone H2B 1.1 | D, H, O [auth N], S [auth R] | 126 | Xenopus laevis | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P02281 (Xenopus laevis) Explore P02281 Go to UniProtKB: P02281 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P02281 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 7 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ISWI one complex protein 3 | K [auth U] | 624 | Saccharomyces cerevisiae S288C | Mutation(s): 0 Gene Names: IOC3, YFR013W |  |
UniProt | |||||
Find proteins for P43596 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P43596 Go to UniProtKB: P43596 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P43596 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 8 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ISWI chromatin-remodeling complex ATPase ISW1 | T [auth V] | 1,062 | Saccharomyces cerevisiae S288C | Mutation(s): 0 Gene Names: ISW1, YBR245C, YBR1633 EC: 3.6.4 |  |
UniProt | |||||
Find proteins for P38144 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38144 Go to UniProtKB: P38144 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P38144 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by:
(by identity cutoff) | 3D Structure
Entity ID: 5 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (343-MER) | 354 | synthetic construct |  | ||
Sequence AnnotationsExpand | |||||
| |||||
Find similar nucleic acids by:
(by identity cutoff) | 3D Structure
Entity ID: 6 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA(343-MER) | 354 | synthetic construct |  | ||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ADP (Subject of Investigation/LOI) Query on ADP | U [auth V] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N |  | ||
| BEF (Subject of Investigation/LOI) Query on BEF | V | BERYLLIUM TRIFLUORIDE ION Be F3 OGIAHMCCNXDTIE-UHFFFAOYSA-K |  | ||
| MG (Subject of Investigation/LOI) Query on MG | W [auth V] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 5.40 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
Entry History & Funding Information
Deposition Data
- Released Date: 2023-09-20 Deposition Author(s): Lifei, L., Kangjing, C., Chen, Z.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Natural Science Foundation of China (NSFC) | China | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-09-20
Type: Initial release
